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literature-pdf-ocr-library

@LigphiDonk/Oh-my--paper
631
6

Search traceable academic papers, download legally accessible PDFs from arXiv and open-access sources, convert PDFs or page images to Markdown with a PaddleOCR layout-parsing API (or local pdfminer fallback), and organize the results into an AI-readable literature library. Use when Claude Code needs to build a paper corpus, batch OCR PDFs to Markdown, ingest real literature into a knowledge base, fetch arXiv or Hugging Face paper leads, or turn a directory of papers into structured Markdown plus metadata.

Install Skill

Shared

Installs to .agents/skills, used by Codex, Amp, Warp, Cursor, OpenCode, and more.

CodexAmp
Warp
CursorOpenCode
Cline
Gemini CLI
GitHub Copilot
Personal

Available across projects.

$npx skills-installer add @LigphiDonk/Oh-my--paper/literature-pdf-ocr-library --client shared
Project

Writes to .agents/skills.

$npx skills-installer add @LigphiDonk/Oh-my--paper/literature-pdf-ocr-library -p --client shared
Note: Review the skill instructions before using it.

SKILL.md

name literature-pdf-ocr-library
description Search traceable academic papers, download legally accessible PDFs from arXiv and open-access sources, convert PDFs or page images to Markdown with a PaddleOCR layout-parsing API (or local pdfminer fallback), and organize the results into an AI-readable literature library. Use when Claude Code needs to build a paper corpus, batch OCR PDFs to Markdown, ingest real literature into a knowledge base, fetch arXiv or Hugging Face paper leads, or turn a directory of papers into structured Markdown plus metadata.
triggers /literature-library, /paper-library, build paper corpus, build literature library, ingest papers, batch ocr papers, download arxiv papers, search and download papers, paper corpus, literature corpus

Literature PDF OCR Library

Overview

Use this skill to build a real, traceable literature corpus instead of fabricating references or scraping arbitrary publisher pages. The default workflow is: narrow the topic, search official or stable APIs, download only legally accessible PDFs, run OCR or layout parsing, then emit a clean Markdown library with machine-readable metadata.


Canonical Directory Layout

In Oh My Paper projects, the corpus always lives under .pipeline/literature/<corpus-name>/.
In standalone projects, use research/literature/<corpus-name>/.
Never dump papers into the root or a flat directory without a corpus name.

.pipeline/
  literature/
    <corpus-name>/              ← one folder per topic/session, e.g. "humanoid-locomotion"
      search_results.json       ← raw search/ID-lookup results
      library_index.json        ← consolidated index for the whole corpus
      library_index.jsonl
      papers/
        <arxiv-id>-<title-slug>/   ← one folder per paper
          metadata.json
          paper.pdf
          ocr/                  ← OCR output lives here, next to the PDF
            paper/
              doc_0.md          ← main OCR markdown (PaddleOCR: multiple pages)
              manifest.json
            doc_0.md            ← pdfminer fallback: single flat file

Rules:

  • --out-dir always points to .pipeline/literature/<corpus-name>/ — never to .pipeline/literature/ directly.
  • OCR output lives inside the paper's own folder (papers/<slug>/ocr/), not in a top-level ocr/ directory.
  • After OCR, record each paper's ocr/ path in literature_bank.md so agents can read the actual content.

Commands

# Download by arXiv IDs (recommended when IDs are known from web search)
python .claude/skills/literature-pdf-ocr-library/scripts/search_and_download_papers.py \
  --arxiv-ids 2502.13817 2501.14459 \
  --out-dir .pipeline/literature/my-corpus \
  --download-pdfs

# Download by query
python .claude/skills/literature-pdf-ocr-library/scripts/search_and_download_papers.py \
  --query "humanoid locomotion reinforcement learning" \
  --out-dir .pipeline/literature/my-corpus \
  --limit 20 --sources arxiv semanticscholar openalex hf_daily \
  --download-pdfs

# OCR: PaddleOCR API (best quality)
export PADDLEOCR_TOKEN="<token>"  # ask user, never hardcode
python .claude/skills/literature-pdf-ocr-library/scripts/paddleocr_layout_to_markdown.py \
  .pipeline/literature/my-corpus/papers/*/paper.pdf \
  --output-dir .pipeline/literature/my-corpus/papers \
  --skip-existing

# OCR: pdfminer fallback (text-only, no layout — confirm with user first)
python .claude/skills/literature-pdf-ocr-library/scripts/paddleocr_layout_to_markdown.py \
  .pipeline/literature/my-corpus/papers/*/paper.pdf \
  --output-dir .pipeline/literature/my-corpus/papers \
  --fallback-pdfminer

# Build index
python .claude/skills/literature-pdf-ocr-library/scripts/build_library_index.py \
  --library-root .pipeline/literature/my-corpus

Resources

  • Read source-strategy.md when you need source-specific behavior, file layout conventions, or legal constraints.
  • Use scripts/search_and_download_papers.py for traceable search and PDF download (supports --query and --arxiv-ids).
  • Use scripts/paddleocr_layout_to_markdown.py for single-file or batch OCR conversion (supports --fallback-pdfminer).
  • Use scripts/build_library_index.py to generate library_index.json and library_index.jsonl.
  • Use scripts/ingest_literature_library.py when the user wants the full ingestion workflow in one go.